1VDV: Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form

PDB ID: 1VDVDownload
MMDB ID: 30983
PDB Deposition Date: 2004/3/25
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 1.98  Å
Source Organism:
Similar Structures:
Biological Unit for 1VDV: dimeric; determined by author and by software (PISA)
Molecular Components in 1VDV
Label Count Molecule
Proteins (2 molecules)
2
Xanthine Dehydrogenase/oxidase
(Gene symbol: XDH)
Molecule annotation
Chemicals and Non-standard biopolymers (39 molecules)
1
4
CALCIUM IONCALCIUM ION
2
4
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
3
2
PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTERPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
4
2
DIOXOTHIOMOLYBDENUM(VI) IONDIOXOTHIOMOLYBDENUM(VI) ION
5
2
FLAVIN-ADENINE DINUCLEOTIDEFLAVIN-ADENINE DINUCLEOTIDE
6
2
1-[3-CYANO-4-(NEOPENTYLOXY)PHENYL]-1H-PYRAZOLE-4-CARBOXYLIC ACID1-[3-CYANO-4-(NEOPENTYLOXY)PHENYL]-1H-PYRAZOLE-4-CARBOXYLIC ACID
7
21
GLYCEROLGLYCEROL
8
2
ACETIC ACIDACETIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303