2XY5: Crystal structure of an artificial salen-copper basepair in complex with fragment DNA polymerase I from Bacillus stearothermophilus

PDB ID: 2XY5Download
MMDB ID: 93115
PDB Deposition Date: 2010/11/15
Updated in MMDB: 2023/12
Experimental Method:
x-ray diffraction
Resolution: 2.22  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 2XY5: trimeric; determined by author and by software (PISA)
Molecular Components in 2XY5
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase I
Molecule annotation
Nucleotides(2 molecules)
1
5'-d(*gp*ap*cp*cp*sayp*tp*cp*cp*cp*tp)-3'
Molecule annotation
1
5'-d(*ap*gp*gp*gp*ap*sayp*gp*gp*tp*cp)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
1
alpha-D-glucopyranosealpha-D-glucopyranose
2
1
alpha-D-fructofuranosealpha-D-fructofuranose
3
4
SULFATE IONSULFATE ION
4
1
(4R)-2-METHYLPENTANE-2,4-DIOL(4R)-2-METHYLPENTANE-2,4-DIOL
5
1
COPPER (I) IONCOPPER (I) ION
6
1
ETHANE-1,2-DIAMINEETHANE-1,2-DIAMINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303