Inhibition of nucleoside transport by new analogues of 4-nitrobenzylthioinosine: replacement of the ribose moiety by substituted benzyl groups

J Med Chem. 2004 Oct 21;47(22):5441-50. doi: 10.1021/jm049735v.

Abstract

4-Nitrobenzylthioinosine (NBTI, 1) is a well-known inhibitor for the nucleoside transport protein ENT1. However, its highly polar nature is unfavorable for oral absorption and/or penetration into the CNS. In the search for compounds with lower polarity than NBTI we replaced its ribose moiety by substituted benzyl groups. Halogen, hydroxyl, (trifluoro)methyl(-oxy), nitro, and amine functionalities were among the substituents at the benzyl group. In general, substitution of the benzyl group resulted in a lower affinity for ENT1. Only 2-hydroxyl substitution showed a higher affinity. Most likely this is the result of hydrogen bonding. Substitution at the 2-position of the benzyl group with aryl groups was also addressed. Compared to parent compound carrying a 2-phenylbenzyl group, all synthesized analogues gave higher affinities. Introduction of fluoro, trifluoromethyl, methoxy, and hydroxyl groups at the phenyl group clearly showed that addition to the 4-position was preferable. Despite the highly different character of a ribose and a benzyl group, Ki values in the low nanomolar range were obtained for the benzyl-substituted derivatives. Compound 35, LUF5919, and compound 60, LUF5929, displayed the highest affinity (Ki = 39 nM for both compounds), having a polar surface area of 101 A2 and 85 A2, respectively.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biological Transport / drug effects
  • Crystallography, X-Ray
  • Equilibrative Nucleoside Transporter 1 / antagonists & inhibitors*
  • Equilibrative Nucleoside Transporter 1 / chemistry
  • Erythrocyte Membrane / metabolism
  • Humans
  • In Vitro Techniques
  • Models, Molecular
  • Nitrobenzenes / chemical synthesis*
  • Nitrobenzenes / chemistry
  • Nitrobenzenes / pharmacology
  • Purines / chemical synthesis*
  • Purines / chemistry
  • Purines / pharmacology
  • Radioligand Assay
  • Structure-Activity Relationship
  • Thionucleotides / chemical synthesis*
  • Thionucleotides / chemistry
  • Thionucleotides / pharmacology

Substances

  • 6-(4-nitrobenzylsulfanyl)-9-(4'-trifluoromethylbiphenyl-2-ylmethyl)purine
  • 9-(2-hydroxybenzyl)-6-(4-nitrobenzylsulfanyl)purine
  • Equilibrative Nucleoside Transporter 1
  • Nitrobenzenes
  • Purines
  • Thionucleotides