Discovery and evaluation of potent P1 aryl heterocycle-based thrombin inhibitors

J Med Chem. 2004 Jun 3;47(12):2995-3008. doi: 10.1021/jm030303e.

Abstract

In an effort to discover potent, clinically useful thrombin inhibitors, a rapid analogue synthetic approach was used to explore the P(1) region. Various benzylamines were coupled to a pyridine/pyrazinone P(2)-P(3) template. One compound with an o-thiadiazole benzylic substitution was found to have a thrombin K(i) of 0.84 nM. A study of ortho-substituted five-membered-ring heterocycles was undertaken and subsequently demonstrated that the o-triazole and tetrazole rings were optimal. Combination of these potent P(1) aryl heterocycles with a variety of P(2)-P(3) groups produced a compound with an extraordinary thrombin inhibitory activity of 1.4 pM. It is hoped that this potency enhancement in P(1) will allow for more diversification in the P(2)-P(3) region to ultimately address additional pharmacological concerns.

MeSH terms

  • Benzylamines / chemical synthesis
  • Benzylamines / chemistry
  • Binding Sites
  • Heterocyclic Compounds / chemical synthesis*
  • Heterocyclic Compounds / chemistry
  • Models, Molecular
  • Pyrazines / chemical synthesis
  • Pyrazines / chemistry
  • Pyridines / chemical synthesis
  • Pyridines / chemistry
  • Structure-Activity Relationship
  • Tetrazoles / chemical synthesis
  • Tetrazoles / chemistry
  • Thiadiazoles / chemical synthesis
  • Thiadiazoles / chemistry
  • Thrombin / antagonists & inhibitors*
  • Thrombin / chemistry
  • Triazoles / chemical synthesis
  • Triazoles / chemistry

Substances

  • Benzylamines
  • Heterocyclic Compounds
  • Pyrazines
  • Pyridines
  • Tetrazoles
  • Thiadiazoles
  • Triazoles
  • Thrombin