BindingDB logo
myBDB logout
Compile Data Set for Download or QSAR

Found 15 hits Enz. Inhib. hit(s) with Target = 'Histone-lysine N-methyltransferase SETDB1'   
Target/Host
(Institution)
LigandTarget/Host
Links
Ligand
Links
Trg + Lig
Links
Ki
nM
ΔG°
kJ/mole
IC50
nM
Kd
nM
EC50/IC50
nM
koff
s-1
kon
M-1s-1
pHTemp
°C
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50009672
PNG
(AdoHcy | CHEMBL418052 | S-(5'-adenosyl)-L-homocyst...)
Show SMILES N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)C(O)=O
Show InChI InChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
Purchase

CHEMBL
MCE
KEGG
MMDB
PC cid
PC sid
PDB
UniChem

Patents


Similars

Article
PubMed
n/an/a 2.20E+3n/an/an/an/an/an/a



Pfizer Inc.

Curated by ChEMBL


Assay Description
Inhibition of SETDB1 (unknown origin) by HMT assay


Bioorg Med Chem Lett 25: 1532-7 (2015)


Article DOI: 10.1016/j.bmcl.2015.02.017
BindingDB Entry DOI: 10.7270/Q2TM7CSS
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50530712
PNG
(CHEMBL4591248)
Show SMILES N[C@@H](CC[C@@H](C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)C#Cc1cccc(c1)C(N)=O)C(O)=O |r|
Show InChI InChI=1S/C24H27N7O6/c25-15(24(35)36)7-6-13(5-4-12-2-1-3-14(8-12)21(27)34)9-16-18(32)19(33)23(37-16)31-11-30-17-20(26)28-10-29-22(17)31/h1-3,8,10-11,13,15-16,18-19,23,32-33H,6-7,9,25H2,(H2,27,34)(H,35,36)(H2,26,28,29)/t13-,15-,16+,18+,19+,23+/m0/s1
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
PDB
UniChem
Article
PubMed
n/an/a>1.00E+4n/an/an/an/an/an/a



BioKin Ltd.

Curated by ChEMBL


Assay Description
Inhibition of human SETDB1 expressed in sf9 insect cells assessed as reduction in methylated histone H3 full length level using histone H3 full lengt...


J Med Chem 62: 9837-9873 (2019)


Article DOI: 10.1021/acs.jmedchem.9b01238
BindingDB Entry DOI: 10.7270/Q2D50RDJ
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50530712
PNG
(CHEMBL4591248)
Show SMILES N[C@@H](CC[C@@H](C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)C#Cc1cccc(c1)C(N)=O)C(O)=O |r|
Show InChI InChI=1S/C24H27N7O6/c25-15(24(35)36)7-6-13(5-4-12-2-1-3-14(8-12)21(27)34)9-16-18(32)19(33)23(37-16)31-11-30-17-20(26)28-10-29-22(17)31/h1-3,8,10-11,13,15-16,18-19,23,32-33H,6-7,9,25H2,(H2,27,34)(H,35,36)(H2,26,28,29)/t13-,15-,16+,18+,19+,23+/m0/s1
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
PDB
UniChem
Article
PubMed
n/an/a>1.00E+4n/an/an/an/an/an/a



BioKin Ltd.

Curated by ChEMBL


Assay Description
Inhibition of human SETDB1 expressed in sf9 insect cells assessed as reduction in methylated histone H3 full length level using histone H3 full lengt...


J Med Chem 62: 9837-9873 (2019)


Article DOI: 10.1021/acs.jmedchem.9b01238
BindingDB Entry DOI: 10.7270/Q2D50RDJ
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50063670
PNG
(CHEMBL3397332)
Show SMILES N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)C(=O)NCc1cc([nH]n1)-c1ccccc1 |r|
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
CHEMBL
PC cid
PC sid
UniChem

Similars

Article
PubMed
n/an/a>1.00E+5n/an/an/an/an/an/a



Pfizer Inc.

Curated by ChEMBL


Assay Description
Inhibition of SETDB1 (unknown origin) by HMT assay


Bioorg Med Chem Lett 25: 1532-7 (2015)


Article DOI: 10.1016/j.bmcl.2015.02.017
BindingDB Entry DOI: 10.7270/Q2TM7CSS
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM225230
PNG
(EED226 | US11013745, Compound EED226)
Show SMILES CS(=O)(=O)c1ccc(cc1)-c1cnc(NCc2ccco2)n2cnnc12
Show InChI InChI=1S/C17H15N5O3S/c1-26(23,24)14-6-4-12(5-7-14)15-10-19-17(22-11-20-21-16(15)22)18-9-13-3-2-8-25-13/h2-8,10-11H,9H2,1H3,(H,18,19)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
Purchase

MCE
PC cid
PC sid
PDB
UniChem
Article
PubMed
n/an/a>1.00E+5n/an/an/an/an/an/a



Novartis Institutes for BioMedical Research



Assay Description
All HMT reactions were performed as described previously [Nasveschuk et al., ACS Med. Chem. Lett., 5:378-383].


Nat Chem Biol 13: 381-388 (2017)


Article DOI: 10.1038/nchembio.2304
BindingDB Entry DOI: 10.7270/Q2S75F64
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50051117
PNG
(CHEMBL3318285)
Show SMILES COc1cc2nc(nc(NCCCCCN3CCCC3)c2cc1OC)N1CCCC1
Show InChI InChI=1S/C23H35N5O2/c1-29-20-16-18-19(17-21(20)30-2)25-23(28-14-8-9-15-28)26-22(18)24-10-4-3-5-11-27-12-6-7-13-27/h16-17H,3-15H2,1-2H3,(H,24,25,26)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
Purchase

CHEMBL
MCE
PC cid
PC sid
UniChem

Patents


Similars

Article
PubMed
n/an/a>1.00E+5n/an/an/an/an/an/a



University of North Carolina at Chapel Hill

Curated by ChEMBL


Assay Description
Inhibition of SETDB1 (unknown origin) assessed as incorporation of tritium-labeled methyl group to lysine or arginine residues of peptide substrate b...


J Med Chem 57: 6822-33 (2014)


Article DOI: 10.1021/jm500871s
BindingDB Entry DOI: 10.7270/Q2J9681Q
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521988
PNG
(CHEMBL4456448)
Show SMILES C[C@@H](O)[C@H](NC(=O)[C@H](CO)NC(=O)[C@@H](N)CCCCN(C)C)C(=O)NCC(=O)NCc1nnc(C)n1-c1ccccc1CNC(C)=O |r,wU:7.7,1.1,wD:13.14,3.21,(17.89,-23.83,;16.56,-23.06,;15.22,-23.83,;16.56,-21.52,;15.22,-20.75,;13.89,-21.52,;13.89,-23.06,;12.56,-20.75,;12.56,-19.21,;13.89,-18.44,;11.22,-21.52,;9.89,-20.75,;9.89,-19.21,;8.56,-21.52,;7.22,-20.75,;8.56,-23.06,;7.22,-23.83,;7.22,-25.37,;5.89,-26.14,;5.89,-27.68,;4.55,-28.45,;7.22,-28.45,;17.89,-20.75,;17.89,-19.21,;19.23,-21.52,;20.56,-20.75,;21.89,-21.52,;21.89,-23.06,;23.23,-20.75,;24.56,-21.52,;25.9,-20.74,;26.36,-19.28,;27.9,-19.27,;28.39,-20.73,;29.85,-21.2,;27.15,-21.64,;27.16,-23.18,;25.82,-23.95,;25.83,-25.49,;27.17,-26.25,;28.5,-25.47,;28.49,-23.93,;29.82,-23.15,;31.16,-23.9,;32.48,-23.12,;33.82,-23.88,;32.47,-21.58,)|
Show InChI InChI=1S/C30H48N10O7/c1-18(42)27(36-29(46)23(17-41)35-28(45)22(31)11-8-9-13-39(4)5)30(47)34-16-26(44)33-15-25-38-37-19(2)40(25)24-12-7-6-10-21(24)14-32-20(3)43/h6-7,10,12,18,22-23,27,41-42H,8-9,11,13-17,31H2,1-5H3,(H,32,43)(H,33,44)(H,34,47)(H,35,45)(H,36,46)/t18-,22+,23+,27+/m1/s1
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 1.27E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521989
PNG
(CHEMBL4453131)
Show SMILES Cc1nnc(C)n1-c1ccccc1CNS(C)(=O)=O |(26.57,-10.36,;28.03,-9.88,;28.5,-8.42,;30.04,-8.41,;30.52,-9.88,;31.99,-10.35,;29.28,-10.79,;29.29,-12.33,;27.97,-13.1,;27.96,-14.64,;29.3,-15.41,;30.64,-14.64,;30.63,-13.09,;31.96,-12.32,;33.3,-13.08,;33.3,-14.61,;31.97,-15.4,;34.84,-14.61,;34.07,-15.95,)|
Show InChI InChI=1S/C12H16N4O2S/c1-9-14-15-10(2)16(9)12-7-5-4-6-11(12)8-13-19(3,17)18/h4-7,13H,8H2,1-3H3
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 4.00E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521990
PNG
(CHEMBL4576037)
Show SMILES CC(=O)NCc1ccccc1-n1c(C)nnc1C |(16.59,-9.42,;15.25,-8.66,;15.25,-7.12,;13.92,-9.43,;12.59,-8.67,;11.26,-9.44,;11.26,-10.99,;9.92,-11.76,;8.59,-10.99,;8.59,-9.45,;9.92,-8.68,;9.92,-7.14,;8.66,-6.24,;7.2,-6.73,;9.13,-4.78,;10.67,-4.77,;11.15,-6.24,;12.62,-6.71,)|
Show InChI InChI=1S/C13H16N4O/c1-9-15-16-10(2)17(9)13-7-5-4-6-12(13)8-14-11(3)18/h4-7H,8H2,1-3H3,(H,14,18)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
PDB
UniChem
PDB
Article
PubMed
n/an/an/a 3.50E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminal His6-tagged human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by IT...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521990
PNG
(CHEMBL4576037)
Show SMILES CC(=O)NCc1ccccc1-n1c(C)nnc1C |(16.59,-9.42,;15.25,-8.66,;15.25,-7.12,;13.92,-9.43,;12.59,-8.67,;11.26,-9.44,;11.26,-10.99,;9.92,-11.76,;8.59,-10.99,;8.59,-9.45,;9.92,-8.68,;9.92,-7.14,;8.66,-6.24,;7.2,-6.73,;9.13,-4.78,;10.67,-4.77,;11.15,-6.24,;12.62,-6.71,)|
Show InChI InChI=1S/C13H16N4O/c1-9-15-16-10(2)17(9)13-7-5-4-6-12(13)8-14-11(3)18/h4-7H,8H2,1-3H3,(H,14,18)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
PDB
UniChem
PDB
Article
PubMed
n/an/an/a 3.50E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521987
PNG
(CHEMBL4542222)
Show SMILES CC(=O)NCc1cc(Br)ccc1-n1c(C)nnc1C |(33.72,-8.68,;32.39,-7.91,;32.38,-6.37,;31.06,-8.69,;29.72,-7.92,;28.39,-8.7,;28.4,-10.25,;27.06,-11.02,;27.06,-12.56,;25.72,-10.25,;25.73,-8.7,;27.05,-7.93,;27.05,-6.39,;25.8,-5.5,;24.33,-5.98,;26.27,-4.03,;27.81,-4.03,;28.29,-5.49,;29.75,-5.96,)|
Show InChI InChI=1S/C13H15BrN4O/c1-8-16-17-9(2)18(8)13-5-4-12(14)6-11(13)7-15-10(3)19/h4-6H,7H2,1-3H3,(H,15,19)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 2.70E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521992
PNG
(CHEMBL4455427)
Show SMILES CC(=O)NCc1cc(Cl)ccc1-n1c(C)nnc1C |(40.76,-7.93,;39.42,-7.16,;39.41,-5.62,;38.09,-7.94,;36.75,-7.17,;35.42,-7.95,;35.43,-9.5,;34.09,-10.27,;34.09,-11.81,;32.75,-9.5,;32.76,-7.96,;34.09,-7.19,;34.08,-5.65,;35.32,-4.74,;36.78,-5.21,;34.84,-3.28,;33.3,-3.28,;32.83,-4.75,;31.36,-5.23,)|
Show InChI InChI=1S/C13H15ClN4O/c1-8-16-17-9(2)18(8)13-5-4-12(14)6-11(13)7-15-10(3)19/h4-6H,7H2,1-3H3,(H,15,19)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 2.50E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521989
PNG
(CHEMBL4453131)
Show SMILES Cc1nnc(C)n1-c1ccccc1CNS(C)(=O)=O |(26.57,-10.36,;28.03,-9.88,;28.5,-8.42,;30.04,-8.41,;30.52,-9.88,;31.99,-10.35,;29.28,-10.79,;29.29,-12.33,;27.97,-13.1,;27.96,-14.64,;29.3,-15.41,;30.64,-14.64,;30.63,-13.09,;31.96,-12.32,;33.3,-13.08,;33.3,-14.61,;31.97,-15.4,;34.84,-14.61,;34.07,-15.95,)|
Show InChI InChI=1S/C12H16N4O2S/c1-9-14-15-10(2)16(9)12-7-5-4-6-11(12)8-13-19(3,17)18/h4-7,13H,8H2,1-3H3
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 4.00E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminal His6-tagged human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by IT...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521986
PNG
(CHEMBL4451286)
Show SMILES CC(=O)NCc1cc(ccc1-n1c(C)nnc1C)C#N |(53.93,-7.53,;52.59,-6.77,;52.59,-5.23,;51.26,-7.54,;49.93,-6.78,;48.6,-7.55,;48.6,-9.1,;47.26,-9.87,;45.93,-9.1,;45.93,-7.56,;47.26,-6.79,;47.26,-5.25,;48.49,-4.35,;49.96,-4.82,;48.01,-2.88,;46.47,-2.89,;46,-4.35,;44.54,-4.84,;47.26,-11.41,;47.26,-12.95,)|
Show InChI InChI=1S/C14H15N5O/c1-9-17-18-10(2)19(9)14-5-4-12(7-15)6-13(14)8-16-11(3)20/h4-6H,8H2,1-3H3,(H,16,20)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 1.00E+7n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair
Histone-lysine N-methyltransferase SETDB1


(Homo sapiens (Human))
BDBM50521991
PNG
(CHEMBL4589361)
Show SMILES CC(=O)NCc1cc(C)ccc1-n1c(C)nnc1C |(66.51,-7.32,;65.17,-6.56,;65.17,-5.02,;63.84,-7.33,;62.5,-6.57,;61.17,-7.34,;61.18,-8.89,;59.84,-9.66,;59.84,-11.2,;58.51,-8.89,;58.51,-7.35,;59.84,-6.58,;59.83,-5.04,;61.07,-4.14,;62.54,-4.61,;60.59,-2.67,;59.05,-2.68,;58.58,-4.14,;57.12,-4.63,)|
Show InChI InChI=1S/C14H18N4O/c1-9-5-6-14(13(7-9)8-15-12(4)19)18-10(2)16-17-11(18)3/h5-7H,8H2,1-4H3,(H,15,19)
PDB

UniProtKB/SwissProt

GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/an/a 7.70E+6n/an/an/an/an/a



University of Toronto

Curated by ChEMBL


Assay Description
Binding affinity to N-terminally biotinylated human SETDB1 Tudor domain (197 to 403 residues) expressed in Escherichia coli BL21(DE3)-pRARE2 cells by...


Bioorg Med Chem 27: 3866-3878 (2019)


Article DOI: 10.1016/j.bmc.2019.07.020
BindingDB Entry DOI: 10.7270/Q2QC06XH
More data for this
Ligand-Target Pair