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Reaction Details
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TargetProthrombin
LigandBDBM16305
Substrate/CompetitorBDBM12679
Meas. Tech.Enzyme Inhibition Assay
pH8.2±n/a
Temperature295.15±n/a K
Ki 23.1±n/a nM
Citation Katz, BAClark, JMFiner-Moore, JSJenkins, TEJohnson, CRRoss, MJLuong, CMoore, WRStroud, RM Design of potent selective zinc-mediated serine protease inhibitors. Nature391:608-12 (1998) [PubMed]  Article
More Info.:Get all data from this article,   Solution Info,  Assay Method
 
Prothrombin
Name:Prothrombin
Synonyms:Activation peptide fragment 1 | Activation peptide fragment 2 | Coagulation factor II | F2 | Prothrombin precursor | THRB_HUMAN | Thrombin heavy chain | Thrombin light chain
Type:Protein
Mol. Mass.:70029.57
Organism:Homo sapiens (Human)
Description:P00734
Residue:622
Sequence:
MAHVRGLQLPGCLALAALCSLVHSQHVFLAPQQARSLLQRVRRANTFLEEVRKGNLEREC
VEETCSYEEAFEALESSTATDVFWAKYTACETARTPRDKLAACLEGNCAEGLGTNYRGHV
NITRSGIECQLWRSRYPHKPEINSTTHPGADLQENFCRNPDSSTTGPWCYTTDPTVRRQE
CSIPVCGQDQVTVAMTPRSEGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASA
QAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETG
DGLDEDSDRAIEGRTATSEYQTFFNPRTFGSGEADCGLRPLFEKKSLEDKTERELLESYI
DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTEN
DLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHP
VCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST
RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKY
GFYTHVFRLKKWIQKVIDQFGE
Blast this sequence in BindingDB or PDB
  Blast E-value cutoff:
BDBM16305
BDBM12679
NameBDBM16305
Synonyms:2-(1H-imidazol-2-ylmethyl)-1H-1,3-benzodiazole-6-carboximidamide | 2-(1H-imidazol-2-ylmethyl)-1H-benzimidazole-6-carboximidamide | APD-3
TypeSmall organic molecule
Emp. Form.C12H12N6
Mol. Mass.240.2639
SMILESNC(=N)c1ccc2nc(Cc3ncc[nH]3)[nH]c2c1
Structure
Search PDB for entries with ligand similarity:Similarity to this molecule at least: