Ki Summary BindingDB logo
myBDB logout
Reaction Details
Report a problem with these data
TargetProtein Nef
LigandBDBM288063
Substrate/Competitorn/a
Meas. Tech.Measurement of Antiviral (HIV-1) Activity
Temperature298.15±n/a K
EC50 6.30±n/a nM
Commentsextracted
Citation Miyazaki, SIsoshima, HOshita, KKawashita, SNagahashi, NTerashita, M Substituted spiropyrido[1,2-a]pyrazine derivative and medicinal use thereof as HIV integrase inhibitor US Patent US10087178 Publication Date 10/2/2018
More Info.:Get all data from this article,  Assay Method
 
Protein Nef
Name:Protein Nef
Synonyms:3ORF | F-protein | HIV-1 Nef | NEF_HV1BR | Negative factor | Protein Nef | nef
Type:C-terminal core protein
Mol. Mass.:23340.47
Organism:Human immunodeficiency virus type 1 (isolate BRU/LAI group M subtype B)
Description:P03406
Residue:206
Sequence:
MGGKWSKSSVVGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEA
QEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGY
FPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREV
LEWRFDSRLAFHHVARELHPEYFKNC
Blast this sequence in BindingDB or PDB
  Blast E-value cutoff:
BDBM288063
n/a
NameBDBM288063
Synonyms:N-(2,4-difluorobenzyl)-9'- hydroxy-2'-isopropyl-cis-3- (methoxymethyl)-1',8'-dioxo- 1',2',3',8'- tetrahydrospiro[cyclobutane- 1,4'-pyrido[1,2-a]pyrazine]- 7'-carboxamide hydrochloride | US10087178, Example S23
TypeSmall organic molecule
Emp. Form.C24H27F2N3O5
Mol. Mass.475.4851
SMILESCOC[C@H]1C[C@@]2(C1)CN(C(C)C)C(=O)c1c(O)c(=O)c(cn21)C(=O)NCc1ccc(F)cc1F |r,wU:5.5,wD:3.2,(7.34,-3.78,;6,-4.55,;4.67,-3.78,;4.67,-2.24,;5.76,-1.15,;4.67,-.07,;3.58,-1.15,;6,.7,;6,2.24,;7.34,3.01,;8.67,2.24,;7.34,4.55,;4.67,3.01,;4.67,4.55,;3.33,2.24,;2,3.01,;2,4.55,;.67,2.24,;-.67,3.01,;.67,.7,;2,-.07,;3.33,.7,;-.67,-.07,;-.67,-1.61,;-2,.7,;-3.33,-.07,;-4.67,.7,;-4.67,2.24,;-6,3.01,;-7.34,2.24,;-8.67,3.01,;-7.34,.7,;-6,-.07,;-6,-1.61,)|
Structure
Search PDB for entries with ligand similarity:Similarity to this molecule at least: