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Compile Data Set for Download or QSAR

Found 5 hits with Last Name = 'hanes' and Initial = 'jw'   
Target/Host
(Institution)
LigandTarget/Host
Links
Ligand
Links
Trg + Lig
Links
Ki
nM
ΔG°
kJ/mole
IC50
nM
Kd
nM
EC50/IC50
nM
koff
s-1
kon
M-1s-1
pHTemp
°C
Thiamine-binding periplasmic protein


(Escherichia coli (strain K12))
BDBM50373877
PNG
(Betaxin | CA inhibitor, 3 | THIAMINE (VIT B1) | Th...)
Show SMILES Cc1c(CCO)sc[n+]1Cc1cnc(C)nc1N
Show InChI InChI=1S/C12H17N4OS/c1-8-11(3-4-17)18-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7,17H,3-4,6H2,1-2H3,(H2,13,14,15)/q+1
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MCE
KEGG
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PC sid
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Article
PubMed
n/an/an/a 3.80n/an/an/an/an/a



Cornell University



Assay Description
the kd for ThOH, ThMP and ThDP were determined using titration experiments in which the change in the intrinsic protein fluorescence was monitored as...


Biochemistry 47: 1346-57 (2008)


Article DOI: 10.1021/bi7018282
BindingDB Entry DOI: 10.7270/Q28C9TVF
More data for this
Ligand-Target Pair
Thiamine-binding periplasmic protein


(Escherichia coli (strain K12))
BDBM92961
PNG
(ThMP)
Show SMILES Cc1c(CCOP(O)(O)=O)sc[n+]1Cc1cnc(C)nc1N
Show InChI InChI=1S/C12H17N4O4PS/c1-8-11(3-4-20-21(17,18)19)22-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7H,3-4,6H2,1-2H3,(H3-,13,14,15,17,18,19)/p+1
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KEGG

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MCE
KEGG
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PDB
Article
PubMed
n/an/an/a 2.30n/an/an/an/an/a



Cornell University



Assay Description
the kd for ThOH, ThMP and ThDP were determined using titration experiments in which the change in the intrinsic protein fluorescence was monitored as...


Biochemistry 47: 1346-57 (2008)


Article DOI: 10.1021/bi7018282
BindingDB Entry DOI: 10.7270/Q28C9TVF
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
DNA polymerase subunit gamma-1


(Homo sapiens (Human))
BDBM21687
PNG
(({[({[(2R,3S,5R)-5-(2-amino-6-oxo-6,9-dihydro-3H-p...)
Show SMILES Nc1nc2n(cnc2c(=O)[nH]1)[C@H]1C[C@H](O)[C@@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)O1
Show InChI InChI=1S/C10H16N5O13P3/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(26-6)2-25-30(21,22)28-31(23,24)27-29(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,24)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1
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PubMed
n/an/an/a 800n/an/an/an/an/a



The University of Texas

Curated by ChEMBL


Assay Description
Binding affinity to exonuclase deficient human recombinant DNA polymerase gamma E200A mutant


J Biol Chem 282: 25159-67 (2007)


Article DOI: 10.1074/jbc.m703972200
BindingDB Entry DOI: 10.7270/Q2959MBG
More data for this
Ligand-Target Pair
DNA polymerase subunit gamma-1


(Homo sapiens (Human))
BDBM50478747
PNG
(Acyclovir triphosphate)
Show SMILES Nc1nc2n(COCCOP(O)(=O)OP(O)(=O)OP(O)(O)=O)cnc2c(=O)[nH]1
Show InChI InChI=1S/C8H14N5O12P3/c9-8-11-6-5(7(14)12-8)10-3-13(6)4-22-1-2-23-27(18,19)25-28(20,21)24-26(15,16)17/h3H,1-2,4H2,(H,18,19)(H,20,21)(H2,15,16,17)(H3,9,11,12,14)
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KEGG
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UniChem
Article
PubMed
n/an/an/a 6.00E+3n/an/an/an/an/a



The University of Texas

Curated by ChEMBL


Assay Description
Binding affinity to exonuclase deficient human recombinant DNA polymerase gamma E200A mutant


J Biol Chem 282: 25159-67 (2007)


Article DOI: 10.1074/jbc.m703972200
BindingDB Entry DOI: 10.7270/Q2959MBG
More data for this
Ligand-Target Pair
Thiamine-binding periplasmic protein


(Escherichia coli (strain K12))
BDBM92962
PNG
(ThDP)
Show SMILES Cc1c(CCOP(O)(=O)OP(O)(O)=O)sc[n+]1Cc1cnc(C)nc1N
Show InChI InChI=1S/C12H18N4O7P2S/c1-8-11(3-4-22-25(20,21)23-24(17,18)19)26-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7H,3-4,6H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1
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KEGG

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MCE
KEGG
MMDB
PC cid
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Article
PubMed
n/an/an/a 7.40n/an/an/an/an/a



Cornell University



Assay Description
the kd for ThOH, ThMP and ThDP were determined using titration experiments in which the change in the intrinsic protein fluorescence was monitored as...


Biochemistry 47: 1346-57 (2008)


Article DOI: 10.1021/bi7018282
BindingDB Entry DOI: 10.7270/Q28C9TVF
More data for this
Ligand-Target Pair