BindingDB logo
myBDB logout

PubMed code 32347094

Compile data set for download or QSAR
Found 10 hits of Enzyme Inhibition Constant Data   
Target/Host
(Institution)
LigandTarget/Host
Links
Ligand
Links
Trg + Lig
Links
Ki
nM
ΔG°
kJ/mole
IC50
nM
Kd
nM
EC50/IC50
nM
koff
s-1
kon
M-1s-1
pHTemp
°C
Histone deacetylase 6


(Homo sapiens (Human))
BDBM19149
PNG
(CHEMBL98 | N-hydroxy-N'-phenyloctanediamide | SAHA...)
Show SMILES ONC(=O)CCCCCCC(=O)Nc1ccccc1
Show InChI InChI=1S/C14H20N2O3/c17-13(15-12-8-4-3-5-9-12)10-6-1-2-7-11-14(18)16-19/h3-5,8-9,19H,1-2,6-7,10-11H2,(H,15,17)(H,16,18)
PDB
MMDB

NCI pathway
Reactome pathway
KEGG

UniProtKB/SwissProt

B.MOAD
DrugBank
antibodypedia
GoogleScholar
AffyNet 
Purchase

CHEMBL
DrugBank
MCE
MMDB
PC cid
PC sid
PDB
UniChem

Patents


Similars

DrugBank
Article
PubMed
n/an/a 24n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC6 (unknown origin) after 30 mins by fluorescence based assay


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase 1


(Homo sapiens (Human))
BDBM19149
PNG
(CHEMBL98 | N-hydroxy-N'-phenyloctanediamide | SAHA...)
Show SMILES ONC(=O)CCCCCCC(=O)Nc1ccccc1
Show InChI InChI=1S/C14H20N2O3/c17-13(15-12-8-4-3-5-9-12)10-6-1-2-7-11-14(18)16-19/h3-5,8-9,19H,1-2,6-7,10-11H2,(H,15,17)(H,16,18)
PDB
MMDB

NCI pathway
Reactome pathway
KEGG

UniProtKB/SwissProt

B.MOAD
DrugBank
antibodypedia
GoogleScholar
AffyNet 
Purchase

CHEMBL
DrugBank
MCE
MMDB
PC cid
PC sid
PDB
UniChem

Patents


Similars

DrugBank
PDB
Article
PubMed
n/an/a 56n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC1 (unknown origin) after 30 mins by fluorescence based assay


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
Histone deacetylase 6


(Homo sapiens (Human))
BDBM50511920
PNG
(CHEMBL4546176)
Show SMILES CN(Cc1ccc(cc1)-n1cnn(CCCCc2ccc(cc2)C(=O)NO)c1=O)CC(O)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C32H34F2N8O4/c1-39(18-32(45,19-40-21-35-20-36-40)28-14-11-26(33)16-29(28)34)17-24-7-12-27(13-8-24)41-22-37-42(31(41)44)15-3-2-4-23-5-9-25(10-6-23)30(43)38-46/h5-14,16,20-22,45-46H,2-4,15,17-19H2,1H3,(H,38,43)
PDB
MMDB

NCI pathway
Reactome pathway
KEGG

UniProtKB/SwissProt

B.MOAD
DrugBank
antibodypedia
GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/a 120n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC6 (unknown origin) after 30 mins by fluorescence based assay


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase 1


(Homo sapiens (Human))
BDBM50511920
PNG
(CHEMBL4546176)
Show SMILES CN(Cc1ccc(cc1)-n1cnn(CCCCc2ccc(cc2)C(=O)NO)c1=O)CC(O)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C32H34F2N8O4/c1-39(18-32(45,19-40-21-35-20-36-40)28-14-11-26(33)16-29(28)34)17-24-7-12-27(13-8-24)41-22-37-42(31(41)44)15-3-2-4-23-5-9-25(10-6-23)30(43)38-46/h5-14,16,20-22,45-46H,2-4,15,17-19H2,1H3,(H,38,43)
PDB
MMDB

NCI pathway
Reactome pathway
KEGG

UniProtKB/SwissProt

B.MOAD
DrugBank
antibodypedia
GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/a 280n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC1 (unknown origin) after 30 mins by fluorescence based assay


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase 6


(Homo sapiens (Human))
BDBM50511919
PNG
(CHEMBL4562449)
Show SMILES CN(Cc1ccc(OCCCOc2ccc(CC(=O)NO)cc2)cc1)CC(O)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C30H33F2N5O5/c1-36(18-30(39,19-37-21-33-20-34-37)27-12-7-24(31)16-28(27)32)17-23-5-10-26(11-6-23)42-14-2-13-41-25-8-3-22(4-9-25)15-29(38)35-40/h3-12,16,20-21,39-40H,2,13-15,17-19H2,1H3,(H,35,38)
PDB
MMDB

NCI pathway
Reactome pathway
KEGG

UniProtKB/SwissProt

B.MOAD
DrugBank
antibodypedia
GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/a 600n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC6 (unknown origin) after 30 mins by fluorescence based assay


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase 1


(Homo sapiens (Human))
BDBM50511919
PNG
(CHEMBL4562449)
Show SMILES CN(Cc1ccc(OCCCOc2ccc(CC(=O)NO)cc2)cc1)CC(O)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C30H33F2N5O5/c1-36(18-30(39,19-37-21-33-20-34-37)27-12-7-24(31)16-28(27)32)17-23-5-10-26(11-6-23)42-14-2-13-41-25-8-3-22(4-9-25)15-29(38)35-40/h3-12,16,20-21,39-40H,2,13-15,17-19H2,1H3,(H,35,38)
PDB
MMDB

NCI pathway
Reactome pathway
KEGG

UniProtKB/SwissProt

B.MOAD
DrugBank
antibodypedia
GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/a 690n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC1 (unknown origin) after 30 mins by fluorescence based assay


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase


(Homo sapiens (Human))
BDBM19149
PNG
(CHEMBL98 | N-hydroxy-N'-phenyloctanediamide | SAHA...)
Show SMILES ONC(=O)CCCCCCC(=O)Nc1ccccc1
Show InChI InChI=1S/C14H20N2O3/c17-13(15-12-8-4-3-5-9-12)10-6-1-2-7-11-14(18)16-19/h3-5,8-9,19H,1-2,6-7,10-11H2,(H,15,17)(H,16,18)
PDB

KEGG

UniProtKB/SwissProt

B.MOAD
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
GoogleScholar
AffyNet 
Purchase

CHEMBL
DrugBank
MCE
MMDB
PC cid
PC sid
PDB
UniChem

Patents


Similars

PDB
Article
PubMed
n/an/a 850n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC in HUVEC using Boc-Lys(Ac)-AMC as substrate preincubated for 12 hrs followed by substrate addition and measured after 4 hrs by flu...


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
3D
3D Structure (crystal)
Histone deacetylase


(Homo sapiens (Human))
BDBM50511919
PNG
(CHEMBL4562449)
Show SMILES CN(Cc1ccc(OCCCOc2ccc(CC(=O)NO)cc2)cc1)CC(O)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C30H33F2N5O5/c1-36(18-30(39,19-37-21-33-20-34-37)27-12-7-24(31)16-28(27)32)17-23-5-10-26(11-6-23)42-14-2-13-41-25-8-3-22(4-9-25)15-29(38)35-40/h3-12,16,20-21,39-40H,2,13-15,17-19H2,1H3,(H,35,38)
PDB

KEGG

UniProtKB/SwissProt

B.MOAD
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/a 2.70E+3n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC in HUVEC using Boc-Lys(Ac)-AMC as substrate preincubated for 12 hrs followed by substrate addition and measured after 4 hrs by flu...


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase


(Homo sapiens (Human))
BDBM50511920
PNG
(CHEMBL4546176)
Show SMILES CN(Cc1ccc(cc1)-n1cnn(CCCCc2ccc(cc2)C(=O)NO)c1=O)CC(O)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C32H34F2N8O4/c1-39(18-32(45,19-40-21-35-20-36-40)28-14-11-26(33)16-29(28)34)17-24-7-12-27(13-8-24)41-22-37-42(31(41)44)15-3-2-4-23-5-9-25(10-6-23)30(43)38-46/h5-14,16,20-22,45-46H,2-4,15,17-19H2,1H3,(H,38,43)
PDB

KEGG

UniProtKB/SwissProt

B.MOAD
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
GoogleScholar
AffyNet 
PC cid
PC sid
UniChem
Article
PubMed
n/an/a 6.80E+3n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC in HUVEC using Boc-Lys(Ac)-AMC as substrate preincubated for 12 hrs followed by substrate addition and measured after 4 hrs by flu...


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
Histone deacetylase


(Homo sapiens (Human))
BDBM25817
PNG
(2-(2,4-difluorophenyl)-1,3-bis(1H-1,2,4-triazol-1-...)
Show SMILES OC(Cn1cncn1)(Cn1cncn1)c1ccc(F)cc1F
Show InChI InChI=1S/C13H12F2N6O/c14-10-1-2-11(12(15)3-10)13(22,4-20-8-16-6-18-20)5-21-9-17-7-19-21/h1-3,6-9,22H,4-5H2
PDB

KEGG

UniProtKB/SwissProt

B.MOAD
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
antibodypedia
GoogleScholar
AffyNet 
Purchase

CHEMBL
DrugBank
MCE
MMDB
PC cid
PC sid
PDB
UniChem

Patents


Similars

Article
PubMed
n/an/a>4.00E+4n/an/an/an/an/an/a



Second Military Medical University

Curated by ChEMBL


Assay Description
Inhibition of HDAC in HUVEC using Boc-Lys(Ac)-AMC as substrate preincubated for 12 hrs followed by substrate addition and measured after 4 hrs by flu...


J Med Chem 63: 5341-5359 (2020)


Article DOI: 10.1021/acs.jmedchem.0c00102
BindingDB Entry DOI: 10.7270/Q2G73J21
More data for this
Ligand-Target Pair
* indicates data uncertainty>20%