Ki Summary BindingDB logo
myBDB logout
Reaction Details
Report a problem with these data
TargetDNA gyrase subunit B
LigandBDBM50423645
Substrate/Competitorn/a
Meas. Tech.ChEMBL_598030 (CHEMBL1046299)
IC50 37±n/a nM
Citation Starr, JTSciotti, RJHanna, DLHuband, MDMullins, LMCai, HGage, JWLockard, MRauckhorst, MROwen, RMLall, MSTomilo, MChen, HMcCurdy, SPBarbachyn, MR 5-(2-Pyrimidinyl)-imidazo[1,2-a]pyridines are antibacterial agents targeting the ATPase domains of DNA gyrase and topoisomerase IV. Bioorg Med Chem Lett19:5302-6 (2009) [PubMed]  Article
More Info.:Get all data from this article,  Assay Method
 
DNA gyrase subunit B
Name:DNA gyrase subunit B
Synonyms:GYRB_STRPN | gyrB
Type:PROTEIN
Mol. Mass.:72222.52
Organism:Streptococcus pneumoniae
Description:ChEMBL_598030
Residue:648
Sequence:
MTEEIKNLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA
GFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSG
GLHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEIVGDTDKTGTTVHFTPDP
KIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKHYHYEGGIASYVEYINE
NKDVIFDTPIYTDGEMDDITVEVAMQYTTGYHENVMSFANNIHTHEGGTHEQGFRTALTR
VINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNR
LFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCS
SNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLF
TAMGTGFGAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQP
PIYGVKVGSEIKEYIQPGADQEIKLQEALARYSEGRTKPTIQRYKGLGEMDDHQLWETTM
DPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLDV
Blast this sequence in BindingDB or PDB
  Blast E-value cutoff:
BDBM50423645
n/a
NameBDBM50423645
Synonyms:Albamycin | Cathomycin | NOVOBIOCIN
TypeSmall organic molecule
Emp. Form.C31H36N2O11
Mol. Mass.612.6243
SMILES[#6]-[#8]-[#6@@H]1-[#6@@H](-[#8]-[#6](-[#7])=O)-[#6@H](-[#8])-[#6@@H](-[#8]-c2ccc3c(-[#8])c(-[#7]-[#6](=O)-c4ccc(-[#8])c(-[#6]\[#6]=[#6](\[#6])-[#6])c4)c(=O)oc3c2-[#6])-[#8]C1([#6])[#6]
Structure
Search PDB for entries with ligand similarity:Similarity to this molecule at least: