Ki Summary BindingDB logo
myBDB logout
Reaction Details
Report a problem with these data
TargetIntegrin alpha-V/beta-5
LigandBDBM50399920
Substrate/Competitorn/a
Meas. Tech.ChEMBL_877702 (CHEMBL2185913)
IC50 219±n/a nM
Citation Colombo, R; Mingozzi, M; Belvisi, L; Arosio, D; Piarulli, U; Carenini, N; Perego, P; Zaffaroni, N; De Cesare, M; Castiglioni, V; Scanziani, E; Gennari, C Synthesis and biological evaluation (in vitro and in vivo) of cyclic arginine-glycine-aspartate (RGD) peptidomimetic-paclitaxel conjugates targeting integrinaVß3. J Med Chem55:10460-74 (2012) [PubMed]  Article
More Info.:Get all data from this article,  Assay Method
 
Integrin alpha-V/beta-5
Name:Integrin alpha-V/beta-5
Synonyms:ITGAV/ITGB5 | Integrin beta-5/Vitronectin receptor alpha
Type:Enzyme
Mol. Mass.:n/a
Description:n/a
Components:This complex has 2 components.
Component 1
Name:Integrin alpha-V
Synonyms:ITAV_HUMAN | ITGAV | Integrin alpha-V/alpha-5 | MSK8 | VNRA | VTNR | Vitronectin receptor | Vitronectin receptor subunit alpha
Type:PROTEIN
Mol. Mass.:116024.92
Organism:Homo sapiens (Human)
Description:ChEMBL_582336
Residue:1048
Sequence:
MAFPPRRRLRLGPRGLPLLLSGLLLPLCRAFNLDVDSPAEYSGPEGSYFGFAVDFFVPSA
SSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKS
HQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDAD
GQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLAT
RTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSSLYNFTGE
QMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTK
LNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQI
LEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVY
PSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRR
ALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAAD
TTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSVDSDQKKIYIGDDNPLTLIVK
AQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAG
TQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNLFDKVSPVVSHKVDLAVLAAVEIRGVSSP
DHVFLPIPNWEHKENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLY
ILHYDIDGPMNCTSDMEINPLRIKISSLQTTEKNDTVAGQGERDHLITKRDLALSEGDIH
TLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIE
FPYKNLPIEDITNSTLVTTNVTWGIQPAPMPVPVWVIILAVLAGLLLLAVLVFVMYRMGF
FKRVRPPQEEQEREQLQPHENGEGNSET
Blast this sequence in BindingDB or PDB
  Blast E-value cutoff:
Component 2
Name:Integrin beta-5
Synonyms:ITB5_HUMAN | ITGB5
Type:PROTEIN
Mol. Mass.:88047.37
Organism:Homo sapiens (Human)
Description:EBI_10915
Residue:799
Sequence:
MPRAPAPLYACLLGLCALLPRLAGLNICTSGSATSCEECLLIHPKCAWCSKEDFGSPRSI
TSRCDLRANLVKNGCGGEIESPASSFHVLRSLPLSSKGSGSAGWDVIQMTPQEIAVNLRP
GDKTTFQLQVRQVEDYPVDLYYLMDLSLSMKDDLDNIRSLGTKLAEEMRKLTSNFRLGFG
SFVDKDISPFSYTAPRYQTNPCIGYKLFPNCVPSFGFRHLLPLTDRVDSFNEEVRKQRVS
RNRDAPEGGFDAVLQAAVCKEKIGWRKDALHLLVFTTDDVPHIALDGKLGGLVQPHDGQC
HLNEANEYTASNQMDYPSLALLGEKLAENNINLIFAVTKNHYMLYKNFTALIPGTTVEIL
DGDSKNIIQLIINAYNSIRSKVELSVWDQPEDLNLFFTATCQDGVSYPGQRKCEGLKIGD
TASFEVSLEARSCPSRHTEHVFALRPVGFRDSLEVGVTYNCTCGCSVGLEPNSARCNGSG
TYVCGLCECSPGYLGTRCECQDGENQSVYQNLCREAEGKPLCSGRGDCSCNQCSCFESEF
GKIYGPFCECDNFSCARNKGVLCSGHGECHCGECKCHAGYIGDNCNCSTDISTCRGRDGQ
ICSERGHCLCGQCQCTEPGAFGEMCEKCPTCPDACSTKRDCVECLLLHSGKPDNQTCHSL
CRDEVITWVDTIVKDDQEAVLCFYKTAKDCVMMFTYVELPSGKSNLTVLREPECGNTPNA
MTILLAVVGSILLVGLALLAIWKLLVTIHDRREFAKFQSERSRARYEMASNPLYRKPIST
HTVDFTFNKFNKSYNGTVD
Blast this sequence in BindingDB or PDB
  Blast E-value cutoff:
BDBM50399920
n/a
NameBDBM50399920
Synonyms:CHEMBL2180984
TypeSmall organic molecule
Emp. Form.C78H91N11O24
Mol. Mass.1566.6164
SMILESCC(=O)O[C@@H]1C2=C(C)[C@H](C[C@@](O)([C@@H](OC(=O)c3ccccc3)[C@@H]3[C@@]4(CO[C@@H]4C[C@H](O)[C@@]3(C)C1=O)OC(C)=O)C2(C)C)OC(=O)[C@H](OC(=O)CCC(=O)NCc1ccc(CN2[C@H]3CNC(=O)[C@H](CC(O)=O)NC(=O)CNC(=O)[C@H](CCCN=C(N)N)NC(=O)C[C@@H](NC3=O)C2=O)cc1)[C@@H](NC(=O)c1ccccc1)c1ccccc1 |r,wU:22.23,26.26,4.3,10.10,30.33,28.30,89.94,77.82,65.70,wD:97.105,12.12,8.45,23.37,44.49,60.64,c:5,(45,-3.57,;44.96,-2.03,;43.6,-1.29,;46.27,-1.23,;47.62,-1.94,;47.68,-4.99,;47.71,-6.52,;46.38,-7.31,;49.05,-7.28,;50.37,-6.49,;50.35,-4.96,;51.7,-5.7,;51.67,-4.17,;53.02,-4.91,;53.03,-6.46,;51.72,-7.23,;54.37,-7.2,;55.69,-6.4,;57.04,-7.14,;57.06,-8.7,;55.74,-9.49,;54.41,-8.73,;51.63,-2.63,;52.95,-1.84,;54.5,-1.81,;54.47,-.28,;52.92,-.28,;51.57,.47,;50.24,-.35,;50.19,1.2,;50.28,-1.89,;50.71,-3.35,;48.93,-1.15,;48.89,.4,;53.36,-3.31,;54.71,-4.05,;56.04,-3.27,;54.73,-5.61,;49.01,-4.2,;48.19,-2.9,;49.75,-2.85,;49.07,-8.81,;47.75,-9.6,;46.41,-8.84,;47.77,-11.13,;49.11,-11.89,;50.43,-11.11,;50.42,-9.57,;51.77,-11.87,;53.1,-11.09,;54.44,-11.86,;54.45,-13.4,;55.77,-11.08,;57.11,-11.84,;58.44,-11.06,;59.77,-11.83,;61.1,-11.05,;61.09,-9.51,;62.42,-8.73,;63.76,-9.49,;63.76,-11.03,;62.43,-11.81,;62.44,-13.35,;63.78,-15.65,;62.45,-16.42,;65.11,-16.41,;65.12,-17.95,;63.79,-18.73,;62.45,-17.96,;63.8,-20.27,;66.44,-15.63,;67.78,-16.4,;67.79,-17.94,;69.11,-15.62,;69.1,-14.08,;70.43,-13.31,;71.77,-14.07,;70.43,-11.77,;71.76,-10.99,;71.75,-9.45,;73.08,-8.67,;73.07,-7.13,;74.41,-6.36,;74.4,-4.82,;75.74,-7.12,;69.09,-11,;69.08,-9.46,;70.41,-8.69,;67.75,-8.7,;66.42,-9.47,;66.43,-11.02,;65.09,-11.79,;65.1,-13.33,;65.08,-8.71,;65.06,-7.17,;59.74,-8.75,;58.42,-9.53,;46.43,-11.91,;45.1,-11.18,;43.78,-11.95,;43.8,-13.5,;42.44,-11.21,;42.42,-9.66,;41.07,-8.92,;39.76,-9.72,;39.79,-11.25,;41.13,-12.01,;46.47,-13.45,;47.82,-14.19,;47.83,-15.74,;46.51,-16.53,;45.16,-15.78,;45.14,-14.24,)|
Structure
Search PDB for entries with ligand similarity:Similarity to this molecule at least: